SLA-DOA protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLA-DOA

Ig-like domain-containing protein; Belongs to the MHC class II family. (360 aa)

Predicted Functional Partners:

HLA-DOB

0.969

HLA-DRA

0.968

CD74

0.950

SLA-DMA

0.948

SLA-DQA1

0.944

SLA-DMB

0.933

SLA-DQB1

0.923

B2M

0.909

SLA-DRB1

0.834

CD4

0.815

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B2M	CD4	ENSSSCP00000050390	ENSSSCP00000019155	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	CD4 molecule.	0.533
B2M	CD74	ENSSSCP00000050390	ENSSSCP00000050395	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Thyroglobulin type-1 domain-containing protein.	0.669
B2M	HLA-DOB	ENSSSCP00000050390	ENSSSCP00000001577	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	HLA class II histocompatibility antigen, DO beta chain.	0.911
B2M	HLA-DRA	ENSSSCP00000050390	ENSSSCP00000001567	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	0.932
B2M	SLA-DMA	ENSSSCP00000050390	ENSSSCP00000030928	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class II family.	0.553
B2M	SLA-DMB	ENSSSCP00000050390	ENSSSCP00000001591	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Major histocompatibility complex, class II, DM beta.	0.509
B2M	SLA-DOA	ENSSSCP00000050390	ENSSSCP00000001596	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class II family.	0.909
B2M	SLA-DQA1	ENSSSCP00000050390	ENSSSCP00000070034	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	SLA class II histocompatibility antigen, DQ haplotype D alpha chain.	0.907
B2M	SLA-DQB1	ENSSSCP00000050390	ENSSSCP00000062346	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	SLA class II histocompatibility antigen, DQ haplotype C beta chain.	0.920
B2M	SLA-DRB1	ENSSSCP00000050390	ENSSSCP00000055121	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein.	0.494
CD4	B2M	ENSSSCP00000019155	ENSSSCP00000050390	CD4 molecule.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	0.533
CD4	CD74	ENSSSCP00000019155	ENSSSCP00000050395	CD4 molecule.	Thyroglobulin type-1 domain-containing protein.	0.543
CD4	HLA-DOB	ENSSSCP00000019155	ENSSSCP00000001577	CD4 molecule.	HLA class II histocompatibility antigen, DO beta chain.	0.842
CD4	HLA-DRA	ENSSSCP00000019155	ENSSSCP00000001567	CD4 molecule.	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	0.993
CD4	SLA-DMA	ENSSSCP00000019155	ENSSSCP00000030928	CD4 molecule.	Ig-like domain-containing protein; Belongs to the MHC class II family.	0.911
CD4	SLA-DMB	ENSSSCP00000019155	ENSSSCP00000001591	CD4 molecule.	Major histocompatibility complex, class II, DM beta.	0.907
CD4	SLA-DOA	ENSSSCP00000019155	ENSSSCP00000001596	CD4 molecule.	Ig-like domain-containing protein; Belongs to the MHC class II family.	0.815
CD4	SLA-DQA1	ENSSSCP00000019155	ENSSSCP00000070034	CD4 molecule.	SLA class II histocompatibility antigen, DQ haplotype D alpha chain.	0.949
CD4	SLA-DRB1	ENSSSCP00000019155	ENSSSCP00000055121	CD4 molecule.	Ig-like domain-containing protein.	0.855
CD74	B2M	ENSSSCP00000050395	ENSSSCP00000050390	Thyroglobulin type-1 domain-containing protein.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	0.669