LRRC1 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LRRC1

Leucine rich repeat containing 1. (524 aa)

Predicted Functional Partners:

DLG3

0.932

SNX7

0.850

UBE3A

0.833

HS2ST1

0.822

DLG4

0.818

LLGL1

0.782

LLGL2

0.777

DLG5

0.752

PHLPP1

0.715

DOCK7

0.708

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLG3	DLG4	ENSSSCP00000013170	ENSSSCP00000072612	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	0.929
DLG3	DLG5	ENSSSCP00000013170	ENSSSCP00000071454	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 5; Belongs to the MAGUK family.	0.455
DLG3	LLGL1	ENSSSCP00000013170	ENSSSCP00000070213	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	LLGL scribble cell polarity complex component 1.	0.964
DLG3	LLGL2	ENSSSCP00000013170	ENSSSCP00000049828	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	LLGL scribble cell polarity complex component 2.	0.956
DLG3	LRRC1	ENSSSCP00000013170	ENSSSCP00000001616	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Leucine rich repeat containing 1.	0.932
DLG3	UBE3A	ENSSSCP00000013170	ENSSSCP00000040516	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	0.926
DLG4	DLG3	ENSSSCP00000072612	ENSSSCP00000013170	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	0.929
DLG4	DLG5	ENSSSCP00000072612	ENSSSCP00000071454	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 5; Belongs to the MAGUK family.	0.617
DLG4	LLGL1	ENSSSCP00000072612	ENSSSCP00000070213	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	LLGL scribble cell polarity complex component 1.	0.982
DLG4	LLGL2	ENSSSCP00000072612	ENSSSCP00000049828	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	LLGL scribble cell polarity complex component 2.	0.981
DLG4	LRRC1	ENSSSCP00000072612	ENSSSCP00000001616	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Leucine rich repeat containing 1.	0.818
DLG4	UBE3A	ENSSSCP00000072612	ENSSSCP00000040516	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	0.594
DLG5	DLG3	ENSSSCP00000071454	ENSSSCP00000013170	Discs large MAGUK scaffold protein 5; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	0.455
DLG5	DLG4	ENSSSCP00000071454	ENSSSCP00000072612	Discs large MAGUK scaffold protein 5; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	0.617
DLG5	LLGL1	ENSSSCP00000071454	ENSSSCP00000070213	Discs large MAGUK scaffold protein 5; Belongs to the MAGUK family.	LLGL scribble cell polarity complex component 1.	0.935
DLG5	LLGL2	ENSSSCP00000071454	ENSSSCP00000049828	Discs large MAGUK scaffold protein 5; Belongs to the MAGUK family.	LLGL scribble cell polarity complex component 2.	0.935
DLG5	LRRC1	ENSSSCP00000071454	ENSSSCP00000001616	Discs large MAGUK scaffold protein 5; Belongs to the MAGUK family.	Leucine rich repeat containing 1.	0.752
DOCK7	HS2ST1	ENSSSCP00000031616	ENSSSCP00000041470	Dedicator of cytokinesis 7; Belongs to the DOCK family.	Uncharacterized protein.	0.640
DOCK7	LRRC1	ENSSSCP00000031616	ENSSSCP00000001616	Dedicator of cytokinesis 7; Belongs to the DOCK family.	Leucine rich repeat containing 1.	0.708
DOCK7	SNX7	ENSSSCP00000031616	ENSSSCP00000045026	Dedicator of cytokinesis 7; Belongs to the DOCK family.	Sorting nexin 7.	0.700