Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF1PHD finger protein 1 isoform X1. (567 aa)    
Predicted Functional Partners:
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
   
 0.978
EZH1
Uncharacterized protein.
   
 0.974
EED
Embryonic ectoderm development.
   
 0.967
EZH2
Enhancer of zeste 2 polycomb repressive complex 2 subunit.
   
 0.966
EPOP
Elongin BC and polycomb repressive complex 2 associated protein.
    
 0.950
JARID2
Jumonji and AT-rich interaction domain containing 2.
    
 0.873
AEBP2
AE binding protein 2.
    
 0.851
RBBP4
WD_REPEATS_REGION domain-containing protein.
   
 0.846
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.846
CBX8
Uncharacterized protein.
    
 0.788
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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