Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCP11T-complex 11. (499 aa)    
Predicted Functional Partners:
CCIN
Calicin.
   
    0.670
TAF11
Transcription initiation factor TFIID subunit 11 isoform 1.
   
  
 0.657
ZNF76
Zinc finger protein 76.
    
 
 0.621
TSPYL1
TSPY like 1; Belongs to the nucleosome assembly protein (NAP) family.
   
  
 0.607
ANKS1A
Ankyrin repeat and sterile alpha motif domain containing 1A.
      
 0.593
FANCE
FA complementation group E.
      
 0.591
TSGA10
Testis specific 10.
   
  
 0.568
IP6K1
Kinase; Belongs to the inositol phosphokinase (IPK) family.
   
  
 0.552
SCUBE3
Signal peptide, CUB domain and EGF like domain containing 3.
    
 
 0.550
PLAAT5
Phospholipase A and acyltransferase 5.
      
 0.531
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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