Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB44RAB44, member RAS oncogene family. (984 aa)    
Predicted Functional Partners:
PTX4
Pentraxin 4.
      
 0.894
VPS52
VPS52 subunit of GARP complex.
      
 0.822
TREML2
Triggering receptor expressed on myeloid cells like 2.
   
  
 0.785
FOXRED2
FAD-dependent oxidoreductase domain-containing protein 2.
      
 0.775
EPHX3
Epoxide hydrolase 3.
   
  
 0.769
LOC100621820
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
   0.673
LOC100739735
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
   0.673
MEGF10
Uncharacterized protein.
      
 0.669
GTPBP1
GTP binding protein 1.
      
 0.666
PLA2G7
Platelet-activating factor acetylhydrolase.
      
 0.594
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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