Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM217Transmembrane protein 217 isoform X3. (192 aa)    
Predicted Functional Partners:
TMEM60
Transmembrane protein 60.
      
 0.777
TMEM236
Transmembrane protein 236.
      
 0.703
TMEM120A
Transmembrane protein 120A isoform 1.
      
 0.701
TMEM50A
Transmembrane protein 50A.
      
 0.700
TMEM120B
Transmembrane protein 120B.
      
 0.622
RHCE
Rh protein; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.553
CHL1
Cell adhesion molecule L1 like.
      
 0.553
MED27
Mediator of RNA polymerase II transcription subunit 27; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
      
 0.551
C2CD2L
C2CD2 like.
      
 0.549
CCNJL
Cyclin J like; Belongs to the cyclin family.
      
 0.547
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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