Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CMTR1Cap methyltransferase 1. (834 aa)    
Predicted Functional Partners:
RNGTT
Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.
    
 
 0.885
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 
 0.843
SMDT1
Single-pass membrane protein with aspartate rich tail 1.
      
 0.711
SUPT7L
STAGA complex 65 subunit gamma isoform b.
      
 0.711
SYDE2
Synapse defective Rho GTPase homolog 2.
      
 0.710
HERC2
HECT and RLD domain containing E3 ubiquitin protein ligase 2.
   
 
 0.706
RNF151
Ring finger protein 151.
   
  
 0.703
RBM18
Putative RNA-binding protein 18 isoform X1.
      
 0.653
RNMT
mRNA cap guanine-N7 methyltransferase.
      
 0.648
PCGF6
Polycomb group RING finger protein 6 isoform a.
      
 0.646
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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