Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGRN | BCAN | ENSSSCP00000034280 | ENSSSCP00000006902 | Agrin. | Brevican core protein isoform X1. | 0.681 |
AGRN | CSPG4 | ENSSSCP00000034280 | ENSSSCP00000002048 | Agrin. | Chondroitin sulfate proteoglycan 4. | 0.646 |
AGRN | DCN | ENSSSCP00000034280 | ENSSSCP00000000977 | Agrin. | Decorin; May affect the rate of fibrils formation. | 0.728 |
AGRN | GPC1 | ENSSSCP00000034280 | ENSSSCP00000047245 | Agrin. | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.569 |
AGRN | SDC3 | ENSSSCP00000034280 | ENSSSCP00000003896 | Agrin. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.500 |
BCAN | AGRN | ENSSSCP00000006902 | ENSSSCP00000034280 | Brevican core protein isoform X1. | Agrin. | 0.681 |
BCAN | CSPG4 | ENSSSCP00000006902 | ENSSSCP00000002048 | Brevican core protein isoform X1. | Chondroitin sulfate proteoglycan 4. | 0.606 |
BCAN | DCN | ENSSSCP00000006902 | ENSSSCP00000000977 | Brevican core protein isoform X1. | Decorin; May affect the rate of fibrils formation. | 0.737 |
BCAN | GPC1 | ENSSSCP00000006902 | ENSSSCP00000047245 | Brevican core protein isoform X1. | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.715 |
BCAN | SDC3 | ENSSSCP00000006902 | ENSSSCP00000003896 | Brevican core protein isoform X1. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.653 |
CSPG4 | AGRN | ENSSSCP00000002048 | ENSSSCP00000034280 | Chondroitin sulfate proteoglycan 4. | Agrin. | 0.646 |
CSPG4 | BCAN | ENSSSCP00000002048 | ENSSSCP00000006902 | Chondroitin sulfate proteoglycan 4. | Brevican core protein isoform X1. | 0.606 |
CSPG4 | DCN | ENSSSCP00000002048 | ENSSSCP00000000977 | Chondroitin sulfate proteoglycan 4. | Decorin; May affect the rate of fibrils formation. | 0.711 |
CSPG4 | GPC1 | ENSSSCP00000002048 | ENSSSCP00000047245 | Chondroitin sulfate proteoglycan 4. | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.562 |
CSPG4 | LOC100525346 | ENSSSCP00000002048 | ENSSSCP00000003333 | Chondroitin sulfate proteoglycan 4. | Uncharacterized protein. | 0.604 |
CSPG4 | PDGFRA | ENSSSCP00000002048 | ENSSSCP00000048936 | Chondroitin sulfate proteoglycan 4. | Platelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development. | 0.615 |
CSPG4 | PDGFRB | ENSSSCP00000002048 | ENSSSCP00000015373 | Chondroitin sulfate proteoglycan 4. | Platelet-derived growth factor receptor beta; Tyrosine-protein kinase that acts as cell-surface receptor for homodimeric PDGFB and PDGFD and for heterodimers formed by PDGFA and PDGFB, and plays an essential role in the regulation of embryonic development, cell proliferation, survival, differentiation, chemotaxis and migration. Plays an essential role in blood vessel development by promoting proliferation, migration and recruitment of pericytes and smooth muscle cells to endothelial cells. | 0.716 |
CSPG4 | PRG4 | ENSSSCP00000002048 | ENSSSCP00000019444 | Chondroitin sulfate proteoglycan 4. | Uncharacterized protein. | 0.653 |
CSPG4 | SDC3 | ENSSSCP00000002048 | ENSSSCP00000003896 | Chondroitin sulfate proteoglycan 4. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.637 |
CSPG4 | SNUPN | ENSSSCP00000002048 | ENSSSCP00000032429 | Chondroitin sulfate proteoglycan 4. | Snurportin 1. | 0.621 |
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