STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH1G-patch domain containing 1. (932 aa)    
Predicted Functional Partners:
WDR83
WD repeat domain-containing protein 83.
    
 
 0.856
PRPF19
Pre-mRNA-processing factor 19.
    
 
 0.677
SDE2
SDE2 telomere maintenance homolog.
    
  0.625
DHX8
DEAH-box helicase 8.
    
 0.609
SYF2
SYF2 pre-mRNA splicing factor.
    
   0.593
A0A286ZMZ7_PIG
Uncharacterized protein.
      
 0.579
MPHOSPH6
M-phase phosphoprotein 6.
      
 0.579
SCGN
Secretagogin.
      
 0.575
CDC16
TPR_REGION domain-containing protein.
      
 0.573
EAPP
E2F-associated phosphoprotein isoform 1.
    
   0.569
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.