STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB4BUncharacterized protein. (228 aa)    
Predicted Functional Partners:
RBM42
RNA binding motif protein 42.
   
  
 0.726
RBSN
Rabenosyn, RAB effector.
    
 
 0.723
RNF103
E3 ubiquitin-protein ligase RNF103 isoform 1.
      
 0.722
TSPAN31
Tetraspanin-31.
      
 0.722
ABCC10
ATP binding cassette subfamily C member 10.
   
 
 0.697
NOL4
Nucleolar protein 4.
    
 
 0.692
ITSN2
Intersectin 2.
    
 
 0.637
PTPRM
Protein tyrosine phosphatase receptor type M.
    
 
 0.627
FKBP10
Peptidylprolyl isomerase.
   
  
 0.615
NUP88
Nucleoporin 88.
      
 0.610
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.