STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOGA3Uncharacterized protein. (944 aa)    
Predicted Functional Partners:
CYB5R4
Cytochrome b5 reductase 4.
      
 0.672
LOC100511607
Uncharacterized protein.
      
 0.582
LOC100512146
Uncharacterized protein.
      
 0.516
SMPD5
Endo/exonuclease/phosphatase domain-containing protein.
      
 0.514
RNF43
RING-type domain-containing protein.
      
 0.503
COPS7A
COP9 signalosome subunit 7A.
      
 0.489
DNMBP
Dynamin binding protein.
      
 0.471
ARFGAP2
ADP ribosylation factor GTPase activating protein 2.
      
 0.469
ARHGAP39
Rho GTPase activating protein 39.
      
 0.457
CYHR1
Cysteine and histidine rich 1.
      
 0.457
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.