STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100520342Nephrocan-like. (512 aa)    
Predicted Functional Partners:
FAM151B
Family with sequence similarity 151 member B.
    
 
 0.736
C1orf109
Chromosome 1 open reading frame 109.
   
    0.696
CALHM2
Calcium homeostasis modulator protein 2 isoform X1.
   
    0.693
LIX1
Limb and CNS expressed 1.
   
    0.687
CWC25
Pre-mRNA-splicing factor CWC25 homolog.
   
 
 0.637
SLCO1A2
Solute carrier organic anion transporter family member.
   
   0.597
RDH13
Retinol dehydrogenase 13 isoform X1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.596
F1RGA1_PIG
Uncharacterized protein.
      
 0.535
GPR33
G protein-coupled receptor 33 variant 1.
      
 0.535
CALHM4
Uncharacterized protein.
   
    0.514
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.