STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MTO1Mitochondrial tRNA translation optimization 1. (691 aa)    
Predicted Functional Partners:
GTPBP3
GTP binding protein 3, mitochondrial.
 
 0.971
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.906
VPS45
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.900
SUPT7L
STAGA complex 65 subunit gamma isoform b.
   
  
 0.822
CCDC127
Coiled-coil domain-containing protein 127.
      
 0.786
FAM104A
Family with sequence similarity 104 member A.
      
 0.786
TRIT1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
   
  
 0.754
CSNK2A2
Casein kinase 2, alpha prime polypeptide; Belongs to the protein kinase superfamily.
   
  
 0.727
AARS1
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
   
  
 0.723
XPNPEP1
X-prolyl aminopeptidase 1; Belongs to the peptidase M24B family.
    
 
 0.723
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.