STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM9Tripartite motif containing 9. (710 aa)    
Predicted Functional Partners:
TRIM44
Tripartite motif containing 44.
    
 
 0.788
TRIM62
E3 ubiquitin-protein ligase TRIM62 isoform 1.
   
 
 0.772
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
 
 0.654
DCC
DCC netrin 1 receptor.
   
 
 0.649
NEO1
Neogenin 1.
   
 
 0.641
ANKRD50
Ankyrin repeat domain 50.
    
 
 0.614
CFAP52
Cilia-and flagella-associated protein 52 isoform X1.
      
 0.611
EVA1A
Eva-1 homolog A, regulator of programmed cell death.
      
 0.609
NTN1
Netrin-1; Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. Binding to UNC5C might cause dissociation of UNC5C from polymerized TUBB3 in microtubules and thereby lead to increased microtubule dynamics and axon repulsion (By similarity). Involved in dorsal root ganglion axon projection towards the spinal cord (By similarity). It also serves as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involve [...]
   
  
 0.602
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.598
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: medium (54%) [HD]