STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL27A1Collagen type XXVII alpha 1 chain. (1843 aa)    
Predicted Functional Partners:
COL4A2
Collagen type IV alpha 2 chain.
  
  
0.745
COL16A1
Collagen alpha-1(XVI) chain isoform X2.
  
  
0.741
COL21A1
Collagen type XXI alpha 1 chain.
  
 
0.735
COL5A1
Fibrillar collagen NC1 domain-containing protein.
  
  
0.697
COL13A1
Collagen type XIII alpha 1 chain.
  
  
0.695
COL23A1
Collagen type XXIII alpha 1 chain.
  
  
0.685
COL5A3
Collagen type V alpha 3 chain.
  
 
0.684
COL5A2
Collagen alpha-2(V) chain preproprotein.
  
 
0.683
COL17A1
Collagen type XVII alpha 1 chain.
  
  
0.677
COL11A1
Collagen type XI alpha 1 chain.
  
 
0.661
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.