Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CIARTCircadian-associated transcriptional repressor isoform a. (453 aa)    
Predicted Functional Partners:
CRY2
Cryptochrome circadian regulator 2.
   
 
 0.812
SPEGNB
SPEG neighbor.
      
 0.765
MIGA2
Mitoguardin 2.
      
 0.763
CRY1
Cryptochrome circadian regulator 1.
   
 
 0.698
NR1D1
Nuclear receptor subfamily 1 group D member 1 isoform X2.
   
  
 0.678
NPAS2
Neuronal PAS domain protein 2.
    
 
 0.664
CLOCK
Clock circadian regulator.
    
 
 0.662
PER1
Period circadian regulator 1.
   
 
 0.659
PAXBP1
PAX3 and PAX7 binding protein 1.
      
 0.632
NR1D2
Uncharacterized protein.
   
 
 0.624
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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