STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRIF1Ligand-dependent nuclear receptor-interacting factor 1 isoform X1. (762 aa)    
Predicted Functional Partners:
RMND5A
Required for meiotic nuclear division 5 homolog A.
      
 0.861
HERC2
HECT and RLD domain containing E3 ubiquitin protein ligase 2.
      
 0.840
RANBP10
RAN binding protein 10.
      
 0.838
NEK4
NIMA related kinase 4.
      
 0.773
SRPK2
SRSF protein kinase 2.
      
 0.761
NPHP4
Nephrocystin 4.
      
 0.690
SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1.
    
 
 0.604
CACYBP
Calcyclin-binding protein isoform 1.
      
 0.577
KCNA3
Potassium voltage-gated channel subfamily A member 3; Belongs to the potassium channel family.
      
 0.574
RARA
Retinoic acid receptor alpha isoform X1.
    
 
 0.551
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.