STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HFM1Helicase for meiosis 1. (1479 aa)    
Predicted Functional Partners:
MLH3
MutL homolog 3.
   
 
 0.859
MSH4
MutS homolog 4.
   
 
 0.858
PRPF8
Pre-mRNA processing factor 8.
   
 
 0.851
RNF212
RING-type domain-containing protein.
      
 0.843
PRPF6
Pre-mRNA processing factor 6.
   
 
 0.789
ASCC2
Activating signal cointegrator 1 complex subunit 2 isoform X8.
    
 
 0.786
SF3B3
Splicing factor 3B subunit 3.
   
 
 0.782
SHOC1
Shortage in chiasmata 1.
      
 0.780
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 
 0.779
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 
 0.777
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.