STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM50E3 ubiquitin-protein ligase TRIM50; E3 ubiquitin-protein ligase (486 aa)    
Predicted Functional Partners:
TMEM184A
Transmembrane protein 184A
      
 0.592
FKBP6
Peptidylprolyl isomerase; FK506 binding protein 6, 36kDa
   
 
 0.577
IFITM5
Interferon induced transmembrane protein 5
      
 0.570
TRIM66
Tripartite motif containing 66
      
 0.540
FKBP10
Peptidylprolyl isomerase; FK506 binding protein 10, 65 kDa
   
 
 0.530
TRIM23
Tripartite motif containing 23
    
 
 0.461
BCL7B
BCL tumor suppressor 7B; B-cell CLL/lymphoma 7B
      
 0.455
IRS1
Uncharacterized protein; Insulin receptor substrate 1
    
 
 0.453
TRIM67
Tripartite motif containing 67
   
  
 0.436
ZDBF2
Zinc finger, DBF-type containing 2
      
 0.430
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, Sus scrofa, pig, pigs, swine, wild boar
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