SETDB2 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

SETDB2

SET domain bifurcated histone lysine methyltransferase 2. (700 aa)

Predicted Functional Partners:

PHF11

0.970

ARL14EP

0.918

CAMKMT

0.902

PLOD2

0.890

PLOD1

0.874

PLOD3

0.871

KMT2E

0.870

SUV39H2

0.846

SUV39H1

0.843

ASH1L

0.819

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL14EP	SETDB2	ENSSSCP00000038286	ENSSSCP00000010026	ADP ribosylation factor like GTPase 14 effector protein.	SET domain bifurcated histone lysine methyltransferase 2.	0.918
ASH1L	CAMKMT	ENSSSCP00000019286	ENSSSCP00000009015	ASH1 like histone lysine methyltransferase.	Calmodulin-lysine N-methyltransferase.	0.903
ASH1L	KMT2E	ENSSSCP00000019286	ENSSSCP00000024064	ASH1 like histone lysine methyltransferase.	Myeloid/lymphoid or mixed-lineage leukemia 5.	0.910
ASH1L	PHF11	ENSSSCP00000019286	ENSSSCP00000010027	ASH1 like histone lysine methyltransferase.	PHD finger protein 11.	0.411
ASH1L	PLOD1	ENSSSCP00000019286	ENSSSCP00000067980	ASH1 like histone lysine methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	0.876
ASH1L	PLOD2	ENSSSCP00000019286	ENSSSCP00000012459	ASH1 like histone lysine methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.	0.893
ASH1L	PLOD3	ENSSSCP00000019286	ENSSSCP00000062914	ASH1 like histone lysine methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.	0.874
ASH1L	SETDB2	ENSSSCP00000019286	ENSSSCP00000010026	ASH1 like histone lysine methyltransferase.	SET domain bifurcated histone lysine methyltransferase 2.	0.819
ASH1L	SUV39H1	ENSSSCP00000019286	ENSSSCP00000051027	ASH1 like histone lysine methyltransferase.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.704
ASH1L	SUV39H2	ENSSSCP00000019286	ENSSSCP00000011784	ASH1 like histone lysine methyltransferase.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.704
CAMKMT	ASH1L	ENSSSCP00000009015	ENSSSCP00000019286	Calmodulin-lysine N-methyltransferase.	ASH1 like histone lysine methyltransferase.	0.903
CAMKMT	KMT2E	ENSSSCP00000009015	ENSSSCP00000024064	Calmodulin-lysine N-methyltransferase.	Myeloid/lymphoid or mixed-lineage leukemia 5.	0.925
CAMKMT	PLOD1	ENSSSCP00000009015	ENSSSCP00000067980	Calmodulin-lysine N-methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	0.919
CAMKMT	PLOD2	ENSSSCP00000009015	ENSSSCP00000012459	Calmodulin-lysine N-methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.	0.919
CAMKMT	PLOD3	ENSSSCP00000009015	ENSSSCP00000062914	Calmodulin-lysine N-methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.	0.919
CAMKMT	SETDB2	ENSSSCP00000009015	ENSSSCP00000010026	Calmodulin-lysine N-methyltransferase.	SET domain bifurcated histone lysine methyltransferase 2.	0.902
CAMKMT	SUV39H1	ENSSSCP00000009015	ENSSSCP00000051027	Calmodulin-lysine N-methyltransferase.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.869
CAMKMT	SUV39H2	ENSSSCP00000009015	ENSSSCP00000011784	Calmodulin-lysine N-methyltransferase.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.931
KMT2E	ASH1L	ENSSSCP00000024064	ENSSSCP00000019286	Myeloid/lymphoid or mixed-lineage leukemia 5.	ASH1 like histone lysine methyltransferase.	0.910
KMT2E	CAMKMT	ENSSSCP00000024064	ENSSSCP00000009015	Myeloid/lymphoid or mixed-lineage leukemia 5.	Calmodulin-lysine N-methyltransferase.	0.925