CNMD protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

CNMD

Chondromodulin. (335 aa)

Predicted Functional Partners:

QRFPR

0.622

LECT2

0.617

MATN3

0.615

MATN4

0.560

PGAM2

0.558

EYA1

0.557

ASB9

0.507

SPNS1

0.505

ECPAS

0.503

OPALIN

0.493

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB9	CNMD	ENSSSCP00000029292	ENSSSCP00000010081	Ankyrin repeat and SOCS box protein 9 isoform 2.	Chondromodulin.	0.507
ASB9	MATN3	ENSSSCP00000029292	ENSSSCP00000009174	Ankyrin repeat and SOCS box protein 9 isoform 2.	Matrilin 3.	0.421
ASB9	MATN4	ENSSSCP00000029292	ENSSSCP00000071113	Ankyrin repeat and SOCS box protein 9 isoform 2.	Matrilin 4.	0.470
CNMD	ASB9	ENSSSCP00000010081	ENSSSCP00000029292	Chondromodulin.	Ankyrin repeat and SOCS box protein 9 isoform 2.	0.507
CNMD	ECPAS	ENSSSCP00000010081	ENSSSCP00000046478	Chondromodulin.	Ecm29 proteasome adaptor and scaffold.	0.503
CNMD	EYA1	ENSSSCP00000010081	ENSSSCP00000038801	Chondromodulin.	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.	0.557
CNMD	LECT2	ENSSSCP00000010081	ENSSSCP00000015226	Chondromodulin.	Leukocyte cell derived chemotaxin 2.	0.617
CNMD	MATN3	ENSSSCP00000010081	ENSSSCP00000009174	Chondromodulin.	Matrilin 3.	0.615
CNMD	MATN4	ENSSSCP00000010081	ENSSSCP00000071113	Chondromodulin.	Matrilin 4.	0.560
CNMD	OPALIN	ENSSSCP00000010081	ENSSSCP00000047204	Chondromodulin.	Opalin; Central nervous system-specific myelin protein that increase myelin genes expression during oligodendrocyte differentiation. Promotes oligodendrocyte terminal differentiation.	0.493
CNMD	PGAM2	ENSSSCP00000010081	ENSSSCP00000017710	Chondromodulin.	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	0.558
CNMD	QRFPR	ENSSSCP00000010081	ENSSSCP00000009707	Chondromodulin.	Pyroglutamylated RFamide peptide receptor; Belongs to the G-protein coupled receptor 1 family.	0.622
CNMD	SPNS1	ENSSSCP00000010081	ENSSSCP00000031089	Chondromodulin.	MFS domain-containing protein.	0.505
ECPAS	CNMD	ENSSSCP00000046478	ENSSSCP00000010081	Ecm29 proteasome adaptor and scaffold.	Chondromodulin.	0.503
EYA1	CNMD	ENSSSCP00000038801	ENSSSCP00000010081	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.	Chondromodulin.	0.557
LECT2	CNMD	ENSSSCP00000015226	ENSSSCP00000010081	Leukocyte cell derived chemotaxin 2.	Chondromodulin.	0.617
MATN3	ASB9	ENSSSCP00000009174	ENSSSCP00000029292	Matrilin 3.	Ankyrin repeat and SOCS box protein 9 isoform 2.	0.421
MATN3	CNMD	ENSSSCP00000009174	ENSSSCP00000010081	Matrilin 3.	Chondromodulin.	0.615
MATN4	ASB9	ENSSSCP00000071113	ENSSSCP00000029292	Matrilin 4.	Ankyrin repeat and SOCS box protein 9 isoform 2.	0.470
MATN4	CNMD	ENSSSCP00000071113	ENSSSCP00000010081	Matrilin 4.	Chondromodulin.	0.560