STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH8Protocadherin 8. (1071 aa)    
Predicted Functional Partners:
MROH7
Uncharacterized protein.
      
 0.761
CDCP2
CUB domain containing protein 2.
      
 0.702
WDR27
Uncharacterized protein.
    
 0.607
SYT6
Synaptotagmin 6.
   
  
 0.557
TPD52L1
TPD52 like 1.
      
 0.551
QSOX2
Sulfhydryl oxidase.
      
 0.535
COL4A4
Collagen type IV alpha 4 chain.
   
  
 0.523
PCDH9
Protocadherin 9.
   
  
0.480
DIPK2A
Divergent protein kinase domain 2A.
      
 0.444
I3LLG5_PIG
Uncharacterized protein.
    
 
 0.428
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.