Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KDM2BLysine demethylase 2B. (1312 aa)    
Predicted Functional Partners:
RNF2
Ring finger protein 2.
   
 
 0.957
KDM2A
Lysine demethylase 2A.
    
 0.928
PCGF1
RING-type domain-containing protein.
   
 
 0.921
BCORL1
BCL6 corepressor like 1.
   
 0.877
YAF2
YY1 associated factor 2.
    
 
 0.870
RYBP
RING1 and YY1 binding protein.
    
 
 0.838
A0A287B8D8_PIG
Uncharacterized protein.
   
 
 0.832
A0A287AGI9_PIG
Skp1 domain-containing protein.
    
 0.823
SKP1
S-phase kinase associated protein 1; Belongs to the SKP1 family.
    
 0.823
PCGF2
Polycomb group RING finger protein 2 isoform X1.
   
 
 0.814
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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