STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM19RNA binding motif protein 19. (940 aa)    
Predicted Functional Partners:
BMS1
BMS1 ribosome biogenesis factor.
   
 
 0.993
IMP4
U3 small nucleolar ribonucleoprotein IMP4 isoform a.
   
   0.989
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.
   
  
 0.954
PWP2
Uncharacterized protein.
   
 
 0.944
SURF6
Surfeit 6.
   
 
 0.936
AATF
Apoptosis antagonizing transcription factor.
   
 
 0.927
DDX10
RNA helicase.
   
 
 0.909
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  
 0.907
DDX56
Uncharacterized protein.
   
 
 0.902
PDCD11
Programmed cell death 11.
   
   0.901
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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