STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX5LIM/homeobox protein Lhx5. (402 aa)    
Predicted Functional Partners:
TLX1
T cell leukemia homeobox 1.
    
 
 0.773
CCNK
Cyclin K; Belongs to the cyclin family.
    
   0.756
ZIC4
Zic family member 4.
  
 
 0.711
BARHL1
BarH like homeobox 1.
   
 
 0.701
RELN
Reelin.
      
 0.634
EMX1
Empty spiracles homeobox 1.
      
 0.605
DBX2
Developing brain homeobox 2.
    
 
 0.597
ZIC1
Zinc finger protein ZIC 1.
  
 
 0.570
FOXG1
Forkhead box G1.
   
 
 0.564
PAX2
Paired box 2.
   
 
 0.548
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.