STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARBP1TAR (HIV-1) RNA binding protein 1. (1613 aa)    
Predicted Functional Partners:
MTREX
Exosome RNA helicase MTR4.
   
    0.802
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.795
UTP20
UTP20 small subunit processome component.
   
    0.790
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.790
MRPL17
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.778
GTPBP3
GTP binding protein 3, mitochondrial.
   
 
 0.776
GTPBP8
GTP binding protein 8 (putative).
  
 
 0.769
UTP4
U3 small nucleolar RNA-associated protein 4 homolog isoform 1.
   
    0.759
A0A287BAP6_PIG
Uncharacterized protein.
   
   0.750
MRPL43
Mitochondrial ribosomal protein L43.
    
   0.728
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.