STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC6Coiled-coil domain containing 6. (478 aa)    
Predicted Functional Partners:
RET
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
     
 0.949
NCOA4
Nuclear receptor coactivator 4.
     
 0.945
CCDC120
Coiled-coil domain containing 120.
      
 0.893
CCDC68
Coiled-coil domain-containing protein 68 isoform X1.
      
 0.869
NIN
Ninein.
      
 0.778
CEP170
Centrosomal protein 170.
    
 
 0.764
PDXDC1
Pyridoxal dependent decarboxylase domain containing 1.
      
 0.661
SRRM2
Serine/arginine repetitive matrix 2.
      
 0.660
PPP4C
Serine/threonine-protein phosphatase.
    
 
 0.610
CEP89
Centrosomal protein of 89 kDa isoform X1.
      
 0.589
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.