STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAX1Ventral anterior homeobox 1. (333 aa)    
Predicted Functional Partners:
PHACTR4
Phosphatase and actin regulator.
      
 0.685
SIX6
Homeobox protein SIX6.
   
 
 0.538
IRF6
Interferon regulatory factor 6.
   
 
 0.536
PAX2
Paired box 2.
    
 
 0.517
ARHGAP29
Rho GTPase-activating protein 29 isoform a.
      
 0.512
LRIG2
Leucine rich repeats and immunoglobulin like domains 2.
    
 
 0.512
POMGNT2
Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-).
      
 0.493
CHD7
Chromodomain helicase DNA binding protein 7.
    
 
 0.492
FOXE1
Forkhead box E1.
   
 
 0.490
OTP
Orthopedia homeobox.
   
  
0.488
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.