STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMU1Uncharacterized protein. (511 aa)    
Predicted Functional Partners:
IK
IK cytokine.
   
 0.994
MFAP1
Microfibril associated protein 1.
   
 0.985
ZMAT2
Zinc finger matrin-type 2.
    
 0.944
PRPF38A
Pre-mRNA processing factor 38A.
   
 0.940
PRPF6
Pre-mRNA processing factor 6.
    
 0.934
WBP4
WW domain-binding protein 4.
    
 0.917
UBL5
Ubiquitin-like protein 5.
    
 0.912
TXNL4A
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
  0.903
GORASP2
Golgi reassembly stacking protein 2.
 
 
  
 0.897
SF3B3
Splicing factor 3B subunit 3.
   
 0.884
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.