LOC100517051 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100517051

Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family. (148 aa)

Predicted Functional Partners:

LYZ

0.908

LTF

0.641

BPI

0.610

PGLYRP1

0.582

PAEP

0.577

VMO1

0.527

CSN2

0.514

SCNN1D

0.512

CST8

0.509

SLC35B4

0.503

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPI	LOC100517051	ENSSSCP00000057155	ENSSSCP00000011751	Bactericidal permeability increasing protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	0.610
BPI	LTF	ENSSSCP00000057155	ENSSSCP00000026769	Bactericidal permeability increasing protein.	Lactotransferrin; Transferrins are iron binding transport proteins which can bind two Fe(3+) ions in association with the binding of an anion, usually bicarbonate. The lactotransferrin transferrin-like domain 1 functions as a serine protease of the peptidase S60 family that cuts arginine rich regions. This function contributes to the antimicrobial activity. Shows a preferential cleavage at -Arg-Ser-Arg-Arg-\|- and -Arg-Arg-Ser-Arg-\|-, and of Z-Phe-Arg-\|-aminomethylcoumarin sites.	0.690
BPI	PGLYRP1	ENSSSCP00000057155	ENSSSCP00000031294	Bactericidal permeability increasing protein.	20 kDa neutrophil cationic protein.	0.492
CSN2	LOC100517051	ENSSSCP00000009875	ENSSSCP00000011751	Beta-casein; Important role in determination of the surface properties of the casein micelles.	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	0.514
CSN2	LTF	ENSSSCP00000009875	ENSSSCP00000026769	Beta-casein; Important role in determination of the surface properties of the casein micelles.	Lactotransferrin; Transferrins are iron binding transport proteins which can bind two Fe(3+) ions in association with the binding of an anion, usually bicarbonate. The lactotransferrin transferrin-like domain 1 functions as a serine protease of the peptidase S60 family that cuts arginine rich regions. This function contributes to the antimicrobial activity. Shows a preferential cleavage at -Arg-Ser-Arg-Arg-\|- and -Arg-Arg-Ser-Arg-\|-, and of Z-Phe-Arg-\|-aminomethylcoumarin sites.	0.816
CSN2	LYZ	ENSSSCP00000009875	ENSSSCP00000042981	Beta-casein; Important role in determination of the surface properties of the casein micelles.	Lysozyme C-2; Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents.	0.453
CSN2	PAEP	ENSSSCP00000009875	ENSSSCP00000044067	Beta-casein; Important role in determination of the surface properties of the casein micelles.	Beta-lactoglobulin-1A/1C; Lactoglobulin is the primary component of whey, it binds retinol and is probably involved in the transport of that molecule.	0.898
CST8	LOC100517051	ENSSSCP00000007587	ENSSSCP00000011751	Cystatin domain-containing protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	0.509
LOC100517051	BPI	ENSSSCP00000011751	ENSSSCP00000057155	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Bactericidal permeability increasing protein.	0.610
LOC100517051	CSN2	ENSSSCP00000011751	ENSSSCP00000009875	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Beta-casein; Important role in determination of the surface properties of the casein micelles.	0.514
LOC100517051	CST8	ENSSSCP00000011751	ENSSSCP00000007587	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Cystatin domain-containing protein.	0.509
LOC100517051	LTF	ENSSSCP00000011751	ENSSSCP00000026769	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Lactotransferrin; Transferrins are iron binding transport proteins which can bind two Fe(3+) ions in association with the binding of an anion, usually bicarbonate. The lactotransferrin transferrin-like domain 1 functions as a serine protease of the peptidase S60 family that cuts arginine rich regions. This function contributes to the antimicrobial activity. Shows a preferential cleavage at -Arg-Ser-Arg-Arg-\|- and -Arg-Arg-Ser-Arg-\|-, and of Z-Phe-Arg-\|-aminomethylcoumarin sites.	0.641
LOC100517051	LYZ	ENSSSCP00000011751	ENSSSCP00000042981	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Lysozyme C-2; Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents.	0.908
LOC100517051	PAEP	ENSSSCP00000011751	ENSSSCP00000044067	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Beta-lactoglobulin-1A/1C; Lactoglobulin is the primary component of whey, it binds retinol and is probably involved in the transport of that molecule.	0.577
LOC100517051	PGLYRP1	ENSSSCP00000011751	ENSSSCP00000031294	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	20 kDa neutrophil cationic protein.	0.582
LOC100517051	SCNN1D	ENSSSCP00000011751	ENSSSCP00000053455	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Amiloride-sensitive sodium channel subunit delta isoform X1; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.512
LOC100517051	SLC35B4	ENSSSCP00000011751	ENSSSCP00000017527	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Solute carrier family 35 member B4.	0.503
LOC100517051	VMO1	ENSSSCP00000011751	ENSSSCP00000071187	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family.	Uncharacterized protein.	0.527
LTF	BPI	ENSSSCP00000026769	ENSSSCP00000057155	Lactotransferrin; Transferrins are iron binding transport proteins which can bind two Fe(3+) ions in association with the binding of an anion, usually bicarbonate. The lactotransferrin transferrin-like domain 1 functions as a serine protease of the peptidase S60 family that cuts arginine rich regions. This function contributes to the antimicrobial activity. Shows a preferential cleavage at -Arg-Ser-Arg-Arg-\|- and -Arg-Arg-Ser-Arg-\|-, and of Z-Phe-Arg-\|-aminomethylcoumarin sites.	Bactericidal permeability increasing protein.	0.690
LTF	CSN2	ENSSSCP00000026769	ENSSSCP00000009875	Lactotransferrin; Transferrins are iron binding transport proteins which can bind two Fe(3+) ions in association with the binding of an anion, usually bicarbonate. The lactotransferrin transferrin-like domain 1 functions as a serine protease of the peptidase S60 family that cuts arginine rich regions. This function contributes to the antimicrobial activity. Shows a preferential cleavage at -Arg-Ser-Arg-Arg-\|- and -Arg-Arg-Ser-Arg-\|-, and of Z-Phe-Arg-\|-aminomethylcoumarin sites.	Beta-casein; Important role in determination of the surface properties of the casein micelles.	0.816