MTPAP protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MTPAP

Poly(A) RNA polymerase, mitochondrial. (598 aa)

Predicted Functional Partners:

SLIRP

0.677

LRPPRC

0.673

MTSS2

0.670

FBXL12

0.669

PABPC5

0.641

PAPOLG

0.620

PDE12

0.612

TMEM50A

0.585

TENT4A

0.579

POLRMT

0.578

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FBXL12	LRPPRC	ENSSSCP00000036404	ENSSSCP00000009020	F-box and leucine rich repeat protein 12.	Leucine-rich PPR motif-containing protein, mitochondrial.	0.549
FBXL12	MTPAP	ENSSSCP00000036404	ENSSSCP00000011752	F-box and leucine rich repeat protein 12.	Poly(A) RNA polymerase, mitochondrial.	0.669
FBXL12	MTSS2	ENSSSCP00000036404	ENSSSCP00000041593	F-box and leucine rich repeat protein 12.	MTSS I-BAR domain containing 2.	0.781
FBXL12	PABPC5	ENSSSCP00000036404	ENSSSCP00000049719	F-box and leucine rich repeat protein 12.	Poly(A) binding protein cytoplasmic 5.	0.669
LRPPRC	FBXL12	ENSSSCP00000009020	ENSSSCP00000036404	Leucine-rich PPR motif-containing protein, mitochondrial.	F-box and leucine rich repeat protein 12.	0.549
LRPPRC	MTPAP	ENSSSCP00000009020	ENSSSCP00000011752	Leucine-rich PPR motif-containing protein, mitochondrial.	Poly(A) RNA polymerase, mitochondrial.	0.673
LRPPRC	MTSS2	ENSSSCP00000009020	ENSSSCP00000041593	Leucine-rich PPR motif-containing protein, mitochondrial.	MTSS I-BAR domain containing 2.	0.549
LRPPRC	PABPC5	ENSSSCP00000009020	ENSSSCP00000049719	Leucine-rich PPR motif-containing protein, mitochondrial.	Poly(A) binding protein cytoplasmic 5.	0.455
LRPPRC	PDE12	ENSSSCP00000009020	ENSSSCP00000012217	Leucine-rich PPR motif-containing protein, mitochondrial.	2',5'-phosphodiesterase 12 isoform 1.	0.685
LRPPRC	POLRMT	ENSSSCP00000009020	ENSSSCP00000042016	Leucine-rich PPR motif-containing protein, mitochondrial.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.684
LRPPRC	SLIRP	ENSSSCP00000009020	ENSSSCP00000066201	Leucine-rich PPR motif-containing protein, mitochondrial.	RRM domain-containing protein.	0.947
MTPAP	FBXL12	ENSSSCP00000011752	ENSSSCP00000036404	Poly(A) RNA polymerase, mitochondrial.	F-box and leucine rich repeat protein 12.	0.669
MTPAP	LRPPRC	ENSSSCP00000011752	ENSSSCP00000009020	Poly(A) RNA polymerase, mitochondrial.	Leucine-rich PPR motif-containing protein, mitochondrial.	0.673
MTPAP	MTSS2	ENSSSCP00000011752	ENSSSCP00000041593	Poly(A) RNA polymerase, mitochondrial.	MTSS I-BAR domain containing 2.	0.670
MTPAP	PABPC5	ENSSSCP00000011752	ENSSSCP00000049719	Poly(A) RNA polymerase, mitochondrial.	Poly(A) binding protein cytoplasmic 5.	0.641
MTPAP	PAPOLG	ENSSSCP00000011752	ENSSSCP00000008955	Poly(A) RNA polymerase, mitochondrial.	Poly(A) polymerase gamma.	0.620
MTPAP	PDE12	ENSSSCP00000011752	ENSSSCP00000012217	Poly(A) RNA polymerase, mitochondrial.	2',5'-phosphodiesterase 12 isoform 1.	0.612
MTPAP	POLRMT	ENSSSCP00000011752	ENSSSCP00000042016	Poly(A) RNA polymerase, mitochondrial.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.578
MTPAP	SLIRP	ENSSSCP00000011752	ENSSSCP00000066201	Poly(A) RNA polymerase, mitochondrial.	RRM domain-containing protein.	0.677
MTPAP	TENT4A	ENSSSCP00000011752	ENSSSCP00000018119	Poly(A) RNA polymerase, mitochondrial.	Terminal nucleotidyltransferase 4A.	0.579