STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1QL3Complement C1q-like protein 3. (255 aa)    
Predicted Functional Partners:
TRMT2B
tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.728
CDH9
Cadherin-9 preproprotein; Cadherins are calcium-dependent cell adhesion proteins.
   
 
 0.674
WDR26
WD repeat domain 26.
      
 0.672
GPR158
G protein-coupled receptor 158.
      
 0.653
ALKBH7
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial.
      
 0.642
PARD3B
Partitioning defective 3 homolog B isoform Par3La.
    
 
 0.618
YPEL1
Protein yippee-like; Belongs to the yippee family.
   
  
 0.617
ACBD7
Acyl-CoA binding domain containing 7.
      
 0.612
NR6A1
Nuclear receptor subfamily 6 group A member 1; Orphan nuclear receptor. Binds to a response element containing the sequence 5'-TCAAGGTCA-3'. May be involved in the regulation of gene expression in germ cell development during gametogenesis (By similarity); Belongs to the nuclear hormone receptor family. NR6 subfamily.
    
 
 0.602
TPBG
Trophoblast glycoprotein.
    
 
 0.595
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.