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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC51Coiled-coil domain-containing protein 51 isoform 1. (421 aa)    
Predicted Functional Partners:
ZNF541
Zinc finger protein 541.
      
 0.900
IFT140
Intraflagellar transport 140.
      
 0.679
ARHGAP23
Rho GTPase activating protein 23.
      
 0.645
ABCB8
ATP binding cassette subfamily B member 8.
    
 0.645
A0A5G2RM07_PIG
Uncharacterized protein.
      
 0.645
ADAMTS18
ADAM metallopeptidase with thrombospondin type 1 motif 18.
      
 0.555
IFT80
Intraflagellar transport 80.
    
 
 0.498
NEK1
NIMA related kinase 1.
      
 0.480
RAB8B
RAB8B, member RAS oncogene family.
      
 0.459
HCN3
Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3.
      
 0.457
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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