STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM6RNA-binding protein 6 isoform 1. (1120 aa)    
Predicted Functional Partners:
WDR83
WD repeat domain-containing protein 83.
      
 0.822
PLEKHF1
Pleckstrin homology and FYVE domain containing 1.
      
 0.822
ERI2
ERI1 exoribonuclease family member 2.
   
  
 0.767
PRSS22
Serine protease 22; Belongs to the peptidase S1 family.
      
 0.765
SF3B4
Splicing factor 3b subunit 4.
    
 
 0.749
RBM39
RNA-binding protein 39 isoform a.
   
 
 0.746
SUGP1
SURP and G-patch domain containing 1.
   
 
 0.726
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.705
ERI1
3'-5' exoribonuclease 1 isoform X1.
   
  
 0.705
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 
 0.704
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.