STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA3FSemaphorin 3F; Belongs to the semaphorin family. (777 aa)    
Predicted Functional Partners:
NRP1
Neuropilin; Belongs to the neuropilin family.
    
 0.983
NRP2
Neuropilin; Belongs to the neuropilin family.
    
 
 0.940
PLXNA1
Plexin A1.
   
 0.892
PLXNA3
Plexin A3.
   
 0.831
SEMA3G
Semaphorin-3G; Belongs to the semaphorin family.
     
  0.791
SLIT1
Slit guidance ligand 1.
      
 0.755
PLXND1
Plexin D1.
   
 0.746
RASSF1
Ras association domain family member 1.
      
 0.721
EFNA5
Ephrin A5; Belongs to the ephrin family.
      
 0.628
PBRM1
Polybromo 1.
      
 0.628
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.