Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LSMEM2Leucine rich single-pass membrane protein 2. (158 aa)    
Predicted Functional Partners:
WDR47
WD repeat domain 47.
      
 0.765
LRRK1
Leucine rich repeat kinase 1.
      
 0.762
ARHGAP21
Rho GTPase activating protein 21.
      
 0.640
UBAP2
Ubiquitin associated protein 2.
      
 0.640
AP3D1
Adaptor related protein complex 3 subunit delta 1.
      
 0.640
SCUBE1
Signal peptide, CUB domain and EGF like domain containing 1.
      
 0.626
PDE1C
Phosphodiesterase.
      
 0.598
TFAP2B
Transcription factor AP-2 beta.
      
 0.592
SPACA1
Sperm acrosome membrane-associated protein 1; Plays a role in acrosome expansion and establishment of normal sperm morphology during spermatogenesis. Important for male fertility.
    
   0.568
DOCK1
Dedicator of cytokinesis 1; Belongs to the DOCK family.
      
 0.552
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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