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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR82WD repeat domain 82. (313 aa)    
Predicted Functional Partners:
WDR33
Pre-mRNA 3' end processing protein WDR33 isoform X1.
   
 0.993
CPSF3
Cleavage and polyadenylation specificity factor subunit 3 isoform X1.
   
 0.989
FIP1L1
Uncharacterized protein.
   
 0.988
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.988
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.977
SYMPK
Symplekin.
   
 
 0.975
CXXC1
CXXC finger protein 1.
   
 0.970
RBBP6
RB binding protein 6, ubiquitin ligase.
   
 
 0.969
A0A5G2QKX6_PIG
CPSF_A domain-containing protein.
    
 
 0.968
SETD1A
SET domain containing 1A, histone lysine methyltransferase.
   
 0.960
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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