Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDR82WD repeat domain 82. (313 aa)    
Predicted Functional Partners:
CXXC1
CXXC finger protein 1.
   
 0.996
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.993
ZC3H4
Zinc finger CCCH-type containing 4.
   
 0.993
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
   
 0.990
PPP1CB
Serine/threonine-protein phosphatase PP1-beta catalytic subunit; Protein phosphatase that associates with over 200 regulatory proteins to form highly specific holoenzymes which dephosphorylate hundreds of biological targets. Protein phosphatase (PP1) is essential for cell division, it participates in the regulation of glycogen metabolism, muscle contractility and protein synthesis. Involved in regulation of ionic conductances and long-term synaptic plasticity. Component of the PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progressi [...]
   
 0.990
CPSF3
Cleavage and polyadenylation specificity factor subunit 3 isoform X1.
   
 0.987
SETD1B
Uncharacterized protein.
   
 0.987
WDR33
Pre-mRNA 3' end processing protein WDR33 isoform X1.
   
 0.984
PPP1CA
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.984
FIP1L1
Uncharacterized protein.
   
 0.984
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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