STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF7PHD finger protein 7 isoform X1. (384 aa)    
Predicted Functional Partners:
TCEAL1
Transcription elongation factor A like 1.
    
   0.788
USP7
Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family.
   
 
 0.777
FUT10
Fucosyltransferase 10.
      
 0.705
USP11
Ubiquitin specific peptidase 11; Belongs to the peptidase C19 family.
    
 
 0.646
EML5
EMAP like 5.
    
 
 0.607
SPATA24
Spermatogenesis-associated protein 24.
   
  
 0.605
SLC9C1
Solute carrier family 9 member C1.
      
 0.601
CYLC2
Cylicin_N domain-containing protein.
   
 0.596
ATF7IP
Activating transcription factor 7 interacting protein.
   
 
 0.562
SMARCD3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.
    
 
 0.559
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.