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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF7PHD finger protein 7 isoform X1. (384 aa)    
Predicted Functional Partners:
SMARCD3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.
    
 
 0.681
ATF7IP
Activating transcription factor 7 interacting protein.
   
 
 0.631
USP11
Ubiquitin specific peptidase 11; Belongs to the peptidase C19 family.
    
 
 0.555
USP15
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
    
 
 0.535
USP4
Ubiquitin specific peptidase 4; Belongs to the peptidase C19 family.
    
 
 0.519
CRISP2
Cysteine-rich secretory protein 2 isoform X1; Belongs to the CRISP family.
   
  
 0.518
NUTM1
NUT midline carcinoma family member 1.
   
 
 0.517
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 
 0.515
SPZ1
Spermatogenic leucine zipper 1.
   
 
 0.498
FBXO47
F-box protein 47.
   
  
 0.498
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.