Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNTNSentan, cilia apical structure protein. (147 aa)    
Predicted Functional Partners:
C20orf85
Chromosome 20 open reading frame 85.
   
    0.755
CFAP58
Cilia-and flagella-associated protein 58.
      
 0.717
FOXJ1
Forkhead box J1.
   
  
 0.713
LDLRAD1
Low density lipoprotein receptor class A domain containing 1.
   
  
 0.647
SCGB3A2
Secretoglobin family 3A member 2.
   
  
 0.627
TRIM72
Tripartite motif-containing protein 72.
      
 0.620
FAM216B
Family with sequence similarity 216 member B.
   
  
 0.597
RSPH4A
Radial spoke head protein 4 homolog A isoform 1.
   
  
 0.589
CHST13
Carbohydrate sulfotransferase.
      
 0.580
CCDC65
Coiled-coil domain containing 65.
   
  
 0.576
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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