Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARL8BADP ribosylation factor like GTPase 8B; Belongs to the small GTPase superfamily. Arf family. (224 aa)    
Predicted Functional Partners:
PLEKHM2
Pleckstrin homology and RUN domain containing M2.
   
 0.872
PLEKHM1
Pleckstrin homology domain-containing family M member 1 isoform X1.
    
 
 0.844
RAB7A
RAB7A, member RAS oncogene family.
   
 0.720
PCDHGB1
Protocadherin gamma subfamily B, 1.
    
 
 0.624
SLC66A1
Uncharacterized protein.
    
 
 0.610
TMEM192
Transmembrane protein 192.
    
 0.589
LAMP1
Uncharacterized protein.
    
 
 0.575
LAMP2
Lysosome-associated membrane glycoprotein 2 isoform A.
   
  
 0.566
VPS26A
VPS26, retromer complex component A.
   
 
 0.559
RUBCN
KIAA0226 protein transcript variant 2.
    
 0.557
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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