Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FGD5FYVE, RhoGEF and PH domain-containing protein 5 isoform 1. (1499 aa)    
Predicted Functional Partners:
PCDH12
Protocadherin 12.
   
  
 0.770
PTPRB
Receptor-type tyrosine-protein phosphatase beta isoform a.
   
  
 0.723
MMRN2
Multimerin 2.
   
 
 0.664
KANK3
KN motif and ankyrin repeat domains 3.
   
 
 0.653
PEAR1
Platelet endothelial aggregation receptor 1.
      
 0.633
ARHGEF15
Rho guanine nucleotide exchange factor 15.
   
  
 0.628
SEMA3G
Semaphorin-3G; Belongs to the semaphorin family.
   
  
 0.576
VAT1L
Vesicle amine transport 1 like.
      
 0.549
ECT2L
Epithelial cell transforming 2 like.
      
 0.547
EGFL7
EGF like domain multiple 7.
   
 
 0.524
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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