Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM108Transmembrane protein 108. (575 aa)    
Predicted Functional Partners:
SUSD5
Sushi domain containing 5.
      
 0.721
ZNF488
Zinc finger protein 488.
      
 0.700
WDR64
Uncharacterized protein.
      
 0.694
COPS7B
COP9 signalosome subunit 7B.
      
 0.680
EPB41L4A
Erythrocyte membrane protein band 4.1 like 4A.
      
 0.661
VPS45
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.640
PLCXD3
Phosphatidylinositol specific phospholipase C X domain containing 3.
      
 0.640
TBC1D16
TBC1 domain family member 16.
      
 0.639
SNX29
Sorting nexin 29.
      
 0.625
PDE11A
Phosphodiesterase.
      
 0.623
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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