Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BFSP2Beaded filament structural protein 2; Belongs to the intermediate filament family. (415 aa)    
Predicted Functional Partners:
BFSP1
Beaded filament structural protein 1; Belongs to the intermediate filament family.
    
 
 0.980
CRYBB2
Crystallin beta B2; Belongs to the beta/gamma-crystallin family.
   
  
 0.836
CRYGD
Crystallin gamma D; Belongs to the beta/gamma-crystallin family.
   
  
 0.832
CRYBB1
Beta-crystallin B1; Crystallins are the dominant structural components of the vertebrate eye lens; Belongs to the beta/gamma-crystallin family.
    
 0.826
GJA3
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.812
PITX3
Homeobox protein.
      
 0.772
HSF4
Heat shock transcription factor 4.
    
 
 0.771
CRYGS
Crystallin gamma S; Belongs to the beta/gamma-crystallin family.
   
  
 0.727
CRYBA4
Crystallin beta A4; Belongs to the beta/gamma-crystallin family.
   
  
 0.719
LOC100156107
Uncharacterized protein; Belongs to the beta/gamma-crystallin family.
   
  
 0.706
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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