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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSL2E3 ubiquitin-protein ligase MSL2 isoform 1. (577 aa)    
Predicted Functional Partners:
MSL3
MSL complex subunit 3.
    
 0.987
MSL1
MSL complex subunit 1.
    
 0.980
KAT8
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.928
KAT5
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.716
MORF4L1
Mortality factor 4-like protein 1 isoform 2.
    
 0.677
MORF4L2
Mortality factor 4 like 2.
    
 0.677
KANSL1
KAT8 regulatory NSL complex subunit 1.
     
 0.658
SNRPA
U1 small nuclear ribonucleoprotein A; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1 snRNP is the first snRNP to interact with pre-mRNA. This interaction is required for the subsequent binding of U2 snRNP and the U4/U6/U5 tri-snRNP. SNRPA binds stem loop II of U1 snRNA. In a snRNP-free form (SF-A) may be involved in coupled pre-mRNA splicing and polyadenylation process. May bind preferentially to the 5'-UGCAC-3' motif on RNAs (By similarity).
      
 0.642
SMNDC1
Survival motor neuron domain containing 1.
   
  
 0.598
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
      
 0.598
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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