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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM42Tripartite motif containing 42. (723 aa)    
Predicted Functional Partners:
TRIM47
Tripartite motif-containing protein 47.
      
 0.722
TRIM69
Tripartite motif containing 69.
      
 0.670
TRIM66
Tripartite motif containing 66.
      
 0.655
TRIM41
E3 ubiquitin-protein ligase TRIM41 isoform 1.
      
 0.653
TRIM4
E3 ubiquitin-protein ligase TRIM4 isoform beta.
      
 0.649
TRIM65
Tripartite motif containing 65.
      
 0.648
TRIM23
E3 ubiquitin-protein ligase TRIM23 isoform alpha.
    
 
 0.617
C14H10orf120
Uncharacterized protein.
   
  
 0.600
LYPD4
Ly6/PLAUR domain-containing protein 4 isoform X4.
   
  
 0.575
SPRED3
Sprouty related EVH1 domain containing 3.
      
 0.574
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.