Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM42Tripartite motif containing 42. (723 aa)    
Predicted Functional Partners:
CCIN
Calicin.
   
   0.754
IGBP1
Uncharacterized protein.
    
 
 0.609
CREB5
cAMP responsive element binding protein 5.
    
   0.601
TRIM23
E3 ubiquitin-protein ligase TRIM23 isoform alpha.
    
 0.579
TRIM69
Tripartite motif containing 69.
   
 
 0.579
TRIM41
E3 ubiquitin-protein ligase TRIM41 isoform 1.
    
 
 0.545
FSD2
Fibronectin type III and SPRY domain-containing protein 2 isoform X1.
      
 0.542
A0A286ZZA3_PIG
14_3_3 domain-containing protein.
    
  0.522
YWHAQ
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta; Belongs to the 14-3-3 family.
    
  0.522
TRIM47
Tripartite motif-containing protein 47.
    
 
 0.511
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.