STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2SURPU2 snRNP-associated SURP motif-containing protein isoform X2. (1029 aa)    
Predicted Functional Partners:
RBM17
RNA binding motif protein 17.
   
 0.978
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.972
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.934
DDX46
DEAD-box helicase 46.
   
 0.904
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 0.865
PUF60
Poly(U)-binding-splicing factor PUF60 isoform a.
   
 0.857
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
  0.849
SNRPB2
RU2B.
   
 0.847
SF3A3
Splicing factor 3a subunit 3.
   
 0.842
SMNDC1
Survival motor neuron domain containing 1.
    
  0.821
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.