Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
U2SURPU2 snRNP-associated SURP motif-containing protein isoform X2. (1029 aa)    
Predicted Functional Partners:
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.998
RBM17
RNA binding motif protein 17.
   
 0.993
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.961
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 0.960
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.960
PRPF40A
Pre-mRNA processing factor 40 homolog A.
   
 
 0.953
SMNDC1
Survival motor neuron domain containing 1.
    
 0.920
TCERG1
Transcription elongation regulator 1.
   
   0.920
SF3A1
Splicing factor 3a subunit 1.
   
0.914
PHF5A
PHD finger protein 5A.
   
  0.912
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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