Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
UPK1BTetraspanin. (259 aa)    
Predicted Functional Partners:
UPK2
Uroplakin-2; Component of the asymmetric unit membrane (AUM); a highly specialized biomembrane elaborated by terminally differentiated urothelial cells. May play an important role in regulating the assembly of the AUM (By similarity); Belongs to the uroplakin-2 family.
  
 
 0.987
UPK3A
Uroplakin 3A.
   
 
 0.987
GPM6A
Glycoprotein M6A.
   
 
 0.752
MAATS1
CFAP91 domain-containing protein.
      
 0.709
UPK3BL2
Uncharacterized protein.
   
  
 0.656
KCTD14
BTB domain-containing protein.
      
 0.595
DDX23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
      
 0.574
NAGPA
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
      
 0.553
ATP13A4
Uncharacterized protein.
      
 0.551
PLA1A
Phospholipase A1 member A isoform X1.
      
 0.546
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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