Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GRAMD1CGRAM domain containing 1C. (664 aa)    
Predicted Functional Partners:
GRAMD2B
GRAM domain containing 2B.
    
 
 0.827
GRAMD1B
GRAM domain containing 1B.
    
 
 0.791
TSPAN11
Tetraspanin.
    
   0.639
CD151
Tetraspanin.
    
   0.639
TMX1
Thioredoxin-related transmembrane protein 1.
    
 
 0.621
GTPBP8
GTP binding protein 8 (putative).
      
 0.560
TMEM192
Transmembrane protein 192.
   
 
 0.558
C12orf66
Chromosome 12 open reading frame 66.
      
 0.537
TMEM211
Uncharacterized protein.
      
 0.534
TMEM205
Transmembrane protein 205.
      
 0.530
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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