GPM6B protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

GPM6B

Glycoprotein M6B. (305 aa)

Predicted Functional Partners:

ZNF12

0.640

TRAPPC2B

0.639

ZNF768

0.545

LRRC15

0.520

RAB9A

0.486

OFD1

0.481

LRRC17

0.480

TM4SF4

0.480

IGDCC4

0.449

NAP1L2

0.445

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GPM6B	IGDCC4	ENSSSCP00000012909	ENSSSCP00000056801	Glycoprotein M6B.	Immunoglobulin superfamily DCC subclass member 4.	0.449
GPM6B	LRRC15	ENSSSCP00000012909	ENSSSCP00000021776	Glycoprotein M6B.	Leucine rich repeat containing 15.	0.520
GPM6B	LRRC17	ENSSSCP00000012909	ENSSSCP00000056723	Glycoprotein M6B.	Leucine rich repeat containing 17.	0.480
GPM6B	NAP1L2	ENSSSCP00000012909	ENSSSCP00000013210	Glycoprotein M6B.	Nucleosome assembly protein 1-like 2; Belongs to the nucleosome assembly protein (NAP) family.	0.445
GPM6B	OFD1	ENSSSCP00000012909	ENSSSCP00000072661	Glycoprotein M6B.	Oral-facial-digital syndrome 1 protein.	0.481
GPM6B	RAB9A	ENSSSCP00000012909	ENSSSCP00000029743	Glycoprotein M6B.	RAB9A, member RAS oncogene family.	0.486
GPM6B	TM4SF4	ENSSSCP00000012909	ENSSSCP00000071490	Glycoprotein M6B.	Transmembrane 4 L six family member 4.	0.480
GPM6B	TRAPPC2B	ENSSSCP00000012909	ENSSSCP00000028340	Glycoprotein M6B.	Trafficking protein particle complex subunit 2; Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi (By similarity).	0.639
GPM6B	ZNF12	ENSSSCP00000012909	ENSSSCP00000060002	Glycoprotein M6B.	Zinc finger protein 12.	0.640
GPM6B	ZNF768	ENSSSCP00000012909	ENSSSCP00000027812	Glycoprotein M6B.	Zinc finger protein 768.	0.545
IGDCC4	GPM6B	ENSSSCP00000056801	ENSSSCP00000012909	Immunoglobulin superfamily DCC subclass member 4.	Glycoprotein M6B.	0.449
IGDCC4	LRRC15	ENSSSCP00000056801	ENSSSCP00000021776	Immunoglobulin superfamily DCC subclass member 4.	Leucine rich repeat containing 15.	0.530
IGDCC4	LRRC17	ENSSSCP00000056801	ENSSSCP00000056723	Immunoglobulin superfamily DCC subclass member 4.	Leucine rich repeat containing 17.	0.473
IGDCC4	TM4SF4	ENSSSCP00000056801	ENSSSCP00000071490	Immunoglobulin superfamily DCC subclass member 4.	Transmembrane 4 L six family member 4.	0.484
LRRC15	GPM6B	ENSSSCP00000021776	ENSSSCP00000012909	Leucine rich repeat containing 15.	Glycoprotein M6B.	0.520
LRRC15	IGDCC4	ENSSSCP00000021776	ENSSSCP00000056801	Leucine rich repeat containing 15.	Immunoglobulin superfamily DCC subclass member 4.	0.530
LRRC15	TM4SF4	ENSSSCP00000021776	ENSSSCP00000071490	Leucine rich repeat containing 15.	Transmembrane 4 L six family member 4.	0.562
LRRC17	GPM6B	ENSSSCP00000056723	ENSSSCP00000012909	Leucine rich repeat containing 17.	Glycoprotein M6B.	0.480
LRRC17	IGDCC4	ENSSSCP00000056723	ENSSSCP00000056801	Leucine rich repeat containing 17.	Immunoglobulin superfamily DCC subclass member 4.	0.473
LRRC17	TM4SF4	ENSSSCP00000056723	ENSSSCP00000071490	Leucine rich repeat containing 17.	Transmembrane 4 L six family member 4.	0.480