Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX53Uncharacterized protein; Belongs to the DEAD box helicase family. (630 aa)    
Predicted Functional Partners:
DHX57
DExH-box helicase 57.
    
 
 0.664
DHX40
Putative ATP-dependent RNA helicase DHX40 isoform X1.
    
 
 0.647
DDX11
DEAD/H-box helicase 11.
   
 0.630
DHX8
DEAH-box helicase 8.
    
 
 0.626
DHX35
Putative ATP-dependent RNA helicase DHX35 isoform 1.
    
 
 0.622
DHX32
DEAH-box helicase 32 (putative).
    
 
 0.606
DHX16
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; Required for pre-mRNA splicing as component of the spliceosome. Contributes to pre-mRNA splicing after spliceosome formation and prior to the first transesterification reaction. Belongs to the DEAD box helicase family. DEAH subfamily. DDX16/PRP8 sub-subfamily.
    
 
 0.583
DHX34
DExH-box helicase 34.
    
 
 0.583
DHX38
DEAH-box helicase 38.
    
 
 0.583
DHX30
DExH-box helicase 30.
    
 
 0.582
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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