STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX53Uncharacterized protein; Belongs to the DEAD box helicase family. (630 aa)    
Predicted Functional Partners:
DHX40
Putative ATP-dependent RNA helicase DHX40 isoform X1.
   
 
 0.664
DHX57
DExH-box helicase 57.
   
 
 0.662
DHX37
DEAH-box helicase 37.
   
 
 0.662
DHX8
DEAH-box helicase 8.
   
 
 0.618
DHX35
Putative ATP-dependent RNA helicase DHX35 isoform 1.
   
 
 0.607
DHX32
DEAH-box helicase 32 (putative).
   
 
 0.597
DHX38
DEAH-box helicase 38.
   
 
 0.596
DHX30
DExH-box helicase 30.
   
 
 0.593
DDX60
Putative ATP-dependent RNA helicase DDX60 isoform X1.
   
 
 0.587
DDX11
DEAD/H-box helicase 11.
   
  
 0.575
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.